Covariance analysis log, written Wed Jul  6 22:08:33 2022

Program: covar
Working directory: /media/romi/My Book Duo/4rgn/4rgn-ag-6d3/310K

Read 5001 frames from dynamic-nopbc.xtc (time 50 to 100 ns)
Read reference structure for fit from md_0_10.tpr
Read index groups from index.ndx

Analysis group is 'Protein' (10527 atoms)
Fit group is 'Protein' (10527 atoms)
Analysis is non-mass weighted
Fit is non-mass weighted
Diagonalized the 31581x31581 covariance matrix
Trace of the covariance matrix before diagonalizing: 3719.16
Trace of the covariance matrix after diagonalizing: 3719.15

Wrote 5000 eigenvalues to eigen.xvg
Wrote reference structure to eigenvec.trr
Wrote average structure to average.pdb and eigenvec.trr
Wrote eigenvectors 1 to 5000 to eigenvec.trr
